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1

Colonic bacterial metabolites and human health

Russell, Wendy R, Hoyles, Lesley, Flint, Harry J, Dumas, Marc-Emmanuel

Journal:

Current Opinion in Microbiology

Year:

2013

Language:

english

File:

PDF, 647 KB

english, 2013

2

Impact of the gut microbiota on inflammation, obesity, and metabolic disease

Boulangé, Claire L., Neves, Ana Luisa, Chilloux, Julien, Nicholson, Jeremy K., Dumas, Marc-Emmanuel

Journal:

Genome Medicine

Year:

2016

Language:

english

File:

PDF, 672 KB

english, 2016

3

Metabolome 2.0: quantitative genetics and network biology of metabolic phenotypes

Dumas, Marc-Emmanuel

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 1.75 MB

english, 2012

4

Statistical Total Correlation Spectroscopy: An Exploratory Approach for Latent Biomarker Identification from Metabolic 1 H NMR Data Sets

Cloarec, Olivier, Dumas, Marc-Emmanuel, Craig, Andrew, Barton, Richard H., Trygg, Johan, Hudson, Jane, Blancher, Christine, Gauguier, Dominique, Lindon, John C., Holmes, Elaine, Nicholson, Jeremy

Journal:

Analytical Chemistry

Year:

2005

Language:

english

File:

PDF, 481 KB

english, 2005

5

Microbial-Host Co-metabolites Are Prodromal Markers Predicting Phenotypic Heterogeneity in Behavior, Obesity, and Impaired Glucose Tolerance

Dumas, Marc-Emmanuel, Rothwell, Alice R., Hoyles, Lesley, Aranias, Thomas, Chilloux, Julien, Calderari, Sophie, Noll, Elisa M., Péan, Noémie, Boulangé, Claire L., Blancher, Christine, Barton, Richard

Journal:

Year:

2017

Language:

english

File:

PDF, 4.60 MB

english, 2017

6

The evolution of partial least squares models and related chemometric approaches in metabonomics and metabolic phenotyping

Judith M. Fonville, Selena E. Richards, Richard H. Barton, Claire L. Boulange, Timothy M. D. Ebbels, Jeremy K. Nicholson, Elaine Holmes, Marc-Emmanuel Dumas

Journal:

Journal of Chemometrics

Year:

2010

Language:

english

File:

PDF, 632 KB

english, 2010

7

Intra- and inter-omic fusion of metabolic profiling data in a systems biology framework

Selena E. Richards, Marc-Emmanuel Dumas, Judith M. Fonville, Timothy M.D. Ebbels, Elaine Holmes, Jeremy K. Nicholson

Journal:

Chemometrics and Intelligent Laboratory Systems

Year:

2010

Language:

english

File:

PDF, 1.18 MB

english, 2010

8

Direct quantitative trait locus mapping of mammalian metabolic phenotypes in diabetic and normoglycemic rat models

Dumas, Marc-Emmanuel, Wilder, Steven P, Bihoreau, Marie-Thérèse, Barton, Richard H, Fearnside, Jane F, Argoud, Karène, D'Amato, Lisa, Wallis, Robert H, Blancher, Christine, Keun, Hector C

Journal:

Nature Genetics

Year:

2007

Language:

english

File:

PDF, 495 KB

english, 2007

9

Two-Dimensional Statistical Recoupling for the Identification of Perturbed Metabolic Networks from NMR Spectroscopy

Blaise, Benjamin J., Navratil, Vincent, Domange, Céline, Shintu, Laetitia, Dumas, Marc-Emmanuel, Elena-Herrmann, Bénédicte, Emsley, Lyndon, Toulhoat, Pierre

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 1.96 MB

english, 2010

10

The Microbial-Mammalian Metabolic Axis: Beyond Simple Metabolism

Marc-Emmanuel Dumas

Journal:

Cell Metabolism

Year:

2011

Language:

english

File:

PDF, 299 KB

english, 2011

11

Gut Microbiota Modulate the Metabolism of Brown Adipose Tissue in Mice

Mestdagh, Renaud, Dumas, Marc-Emmanuel, Rezzi, Serge, Kochhar, Sunil, Holmes, Elaine, Claus, Sandrine P., Nicholson, Jeremy K.

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.05 MB

english, 2012

12

Metabonomic Assessment of Physiological Disruptions Using 1 H− 13 C HMBC-NMR Spectroscopy Combined with Pattern Recognition Procedures Performed on Filtered Variables

Dumas, Marc-Emmanuel, Canlet, Cécile, André, François, Vercauteren, Joseph, Paris, Alain

Journal:

Analytical Chemistry

Year:

2002

Language:

english

File:

PDF, 184 KB

english, 2002

13

Statistical Recoupling Prior to Significance Testing in Nuclear Magnetic Resonance Based Metabonomics

Blaise, Benjamin J., Shintu, Laetitia, Elena, Bénédicte, Emsley, Lyndon, Dumas, Marc-Emmanuel, Toulhoat, Pierre

Journal:

Analytical Chemistry

Year:

2009

Language:

english

File:

PDF, 3.52 MB

english, 2009

14

Metabolic Profiling Strategy of Caenorhabditis elegans by Whole-Organism Nuclear Magnetic Resonance

Blaise, Benjamin J., Giacomotto, Jean, Triba, Mohamed N., Toulhoat, Pierre, Piotto, Martial, Emsley, Lyndon, Ségalat, Laurent, Dumas, Marc-Emmanuel, Elena, Bénédicte

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 4.43 MB

english, 2009

15

Transgenomic Metabolic Interactions in a Mouse Disease Model: Interactions of Trichinella s piralis Infection with Dietary Lactobacillus p aracasei Supplementation

Martin, Francois-Pierre J., Verdu, Elena F., Wang, Yulan, Dumas, Marc-Emmanuel, Yap, Ivan K. S., Cloarec, Olivier, Bergonzelli, Gabriela E., Corthesy-Theulaz, Irene, Kochhar, Sunil, Holmes, Elaine, Li

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 392 KB

english, 2006

16

Selection of Biomarkers by a Multivariate Statistical Processing of Composite Metabonomic Data Sets Using Multiple Factor Analysis

Dumas, Marc-Emmanuel, Canlet, Cécile, Debrauwer, Laurent, Martin, Pascal, Paris, Alain

Journal:

Journal of Proteome Research

Year:

2005

Language:

english

File:

PDF, 348 KB

english, 2005

17

Metabolomics-on-a-chip and metabolic flux analysis for label-free modeling of the internal metabolism of HepG2/C3A cells

Ouattara, Djomangan Adama, Prot, Jean-Matthieu, Bunescu, Andrei, Dumas, Marc-Emmanuel, Elena-Herrmann, Bénédicte, Leclerc, Eric, Brochot, Céline

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 2.89 MB

english, 2012

18

Homeostatic Signature of Anabolic Steroids in Cattle Using 1 H− 13 C HMBC NMR Metabonomics

Dumas, Marc-Emmanuel, Canlet, Cécile, Vercauteren, Joseph, André, François, Paris, Alain

Journal:

Journal of Proteome Research

Year:

2005

Language:

english

File:

PDF, 308 KB

english, 2005

19

Assessment of Analytical Reproducibility of 1 H NMR Spectroscopy Based Metabonomics for Large-Scale Epidemiological Research: the INTERMAP Study

Dumas, Marc-Emmanuel, Maibaum, Elaine C., Teague, Claire, Ueshima, Hirotsugu, Zhou, Beifan, Lindon, John C., Nicholson, Jeremy K., Stamler, Jeremiah, Elliott, Paul, Chan, Queenie, Holmes, Elaine

Journal:

Analytical Chemistry

Year:

2006

Language:

english

File:

PDF, 403 KB

english, 2006

20

Objective Set of Criteria for Optimization of Sample Preparation Procedures for Ultra-High Throughput Untargeted Blood Plasma Lipid Profiling by Ultra Performance Liquid Chromatography–Mass Spectrometry

Sarafian, Magali H., Gaudin, Mathieu, Lewis, Matthew R., Martin, Francois-Pierre, Holmes, Elaine, Nicholson, Jeremy K., Dumas, Marc-Emmanuel

Journal:

Analytical Chemistry

Year:

2014

Language:

english

File:

PDF, 2.17 MB

english, 2014

21

Analyzing the Physiological Signature of Anabolic Steroids in Cattle Urine Using Pyrolysis/Metastable Atom Bombardment Mass Spectrometry and Pattern Recognition

Dumas, Marc-Emmanuel, Debrauwer, Laurent, Beyet, Loïc, Lesage, Denis, André, François, Paris, Alain, Tabet, Jean-Claude

Journal:

Analytical Chemistry

Year:

2002

Language:

english

File:

PDF, 272 KB

english, 2002

22

A metabolic system-wide characterisation of the pig: a model for human physiology

Merrifield, Claire A., Lewis, Marie, Claus, Sandrine P., Beckonert, Olaf P., Dumas, Marc-Emmanuel, Duncker, Swantje, Kochhar, Sunil, Rezzi, Serge, Lindon, John C., Bailey, Mick, Holmes, Elaine, Nichol

Journal:

Molecular BioSystems

Year:

2011

Language:

english

File:

PDF, 2.37 MB

english, 2011

23

Metabolic Profiling and Phenotyping of Central Nervous System Diseases: Metabolites Bring Insights into Brain Dysfunctions

Dumas, Marc-Emmanuel, Davidovic, Laetitia

Journal:

Journal of Neuroimmune Pharmacology

Year:

2015

Language:

english

File:

PDF, 1.73 MB

english, 2015

24

A top-down systems biology view of microbiome-mammalian metabolic interactions in a mouse model

Martin, François-Pierre J, Dumas, Marc-Emmanuel, Wang, Yulan, Legido-Quigley, Cristina, Yap, Ivan K S, Tang, Huiru, Zirah, Séverine, Murphy, Gerard M, Cloarec, Olivier, Lindon, John C, Sprenger, Norbe

Journal:

Molecular Systems Biology

Year:

2007

Language:

english

File:

PDF, 650 KB

english, 2007

25

mQTL.NMR: An Integrated Suite for Genetic Mapping of Quantitative Variations of 1 H NMR-Based Metabolic Profiles

Hedjazi, Lyamine, Gauguier, Dominique, Zalloua, Pierre A., Nicholson, Jeremy K., Dumas, Marc-Emmanuel, Cazier, Jean-Baptiste

Journal:

Analytical Chemistry

Year:

2015

Language:

english

File:

PDF, 1.23 MB

english, 2015

26

Bile Acid Profiling and Quantification in Biofluids using Ultra-Performance Liquid Chromatography Tandem Mass Spectrometry

Sarafian, Magali H., Lewis, Matthew R., Pechlivanis, Alexandros, Ralphs, Simon, Mc Phail, Mark J.W., Patel, Vishal C., Dumas, Marc-Emmanuel, Holmes, Elaine, Nicholson, Jeremy Kirk

Journal:

Analytical Chemistry

Year:

2015

Language:

english

File:

PDF, 1.25 MB

english, 2015

27

Bacterial adaptation to the gut environment favors successful colonization

Rezzonico, Enea, Mestdagh, Renaud, Delley, Michèle, Combremont, Séverine, Dumas, Marc-Emmanuel, Holmes, Elaine, Nicholson, Jeremy, Bibiloni, Rodrigo

Journal:

Year:

2011

Language:

english

File:

PDF, 1.48 MB

english, 2011

28

The microbiome and its pharmacological targets: therapeutic avenues in cardiometabolic diseases

Neves, Ana Luisa, Chilloux, Julien, Sarafian, Magali H, Rahim, Mohd Badrin Abdul, Boulangé, Claire L, Dumas, Marc-Emmanuel

Journal:

Current Opinion in Pharmacology

Year:

2015

Language:

english

File:

PDF, 931 KB

english, 2015

29

Is the way we’re dieting wrong?

Dumas, Marc-Emmanuel

Journal:

Genome Medicine

Year:

2016

Language:

english

File:

PDF, 356 KB

english, 2016

30

A multiplexed targeted assay for high-throughput quantitative analysis of serum methylamines by ultra performance liquid chromatography coupled to high resolution mass spectrometry

Kadar, Hanane, Dubus, Justine, Dutot, Jérémie, Hedjazi, Lyamine, Srinivasa, Suman, Fitch, Kathleen V., Grinspoon, Steven K., Nicholson, Jeremy K., Dumas, Marc-Emmanuel, Gauguier, Dominique

Journal:

Archives of Biochemistry and Biophysics

Year:

2016

Language:

english

File:

PDF, 1.91 MB

english, 2016

31

Guest Editorial: Special issue on metabolomics

Dumas, Marc-Emmanuel, Adamski, Jerzy, Suhre, Karsten

Journal:

Archives of Biochemistry and Biophysics

Year:

2016

Language:

english

File:

PDF, 189 KB

english, 2016

32

The microbial-mammalian metabolic axis

Chilloux, Julien, Neves, Ana Luisa, Boulangé, Claire L., Dumas, Marc-Emmanuel

Journal:

Current Opinion in Clinical Nutrition & Metabolic Care

Year:

2016

Language:

english

File:

PDF, 282 KB

english, 2016

33

Topological analysis of metabolic networks integrating co-segregating transcriptomes and metabolomes in type 2 diabetic rat congenic series

Dumas, Marc-Emmanuel, Domange, Céline, Calderari, Sophie, Martínez, Andrea Rodríguez, Ayala, Rafael, Wilder, Steven P., Suárez-Zamorano, Nicolas, Collins, Stephan C., Wallis, Robert H., Gu, Quan, Wang

Journal:

Genome Medicine

Year:

2016

Language:

english

File:

PDF, 2.76 MB

english, 2016

34

MetaboSignal: a network-based approach for topological analysis of metabotype regulation via metabolic and signaling pathways

Rodriguez-Martinez, Andrea, Ayala, Rafael, Posma, Joram M., Neves, Ana L., Gauguier, Dominique, Nicholson, Jeremy K., Dumas, Marc-Emmanuel

Journal:

Year:

2016

Language:

english

File:

PDF, 130 KB

english, 2016

35

Metabolic phenotyping and systems biology approaches to understanding neurological disorders

Dumas, Marc-Emmanuel, Davidovic, Laetitia

Journal:

F1000Prime Reports

Year:

2013

Language:

english

File:

PDF, 814 KB

english, 2013

36

Are Gut Microbes Responsible for Post-dieting Weight Rebound?

Chilloux, Julien, Dumas, Marc-Emmanuel

Journal:

Cell Metabolism

Year:

2017

Language:

english

File:

PDF, 421 KB

english, 2017

37

Circulating MicroRNAs to Predict the Risk for Metabolic Diseases in the General Population?

Dumas, Marc-Emmanuel, Emanueli, Costanza

Journal:

Year:

2017

Language:

english

File:

PDF, 773 KB

english, 2017

38

Genomic regulation of type 2 diabetes endophenotypes: Contribution from genetic studies in the Goto-Kakizaki rat

Bihoreau, Marie-Thérèse, Dumas, Marc-Emmanuel, Lathrop, Mark, Gauguier, Dominique

Journal:

Year:

2017

Language:

english

File:

PDF, 1.35 MB

english, 2017

39

MWASTools: an R/bioconductor package for metabolome-wide association studies

Rodriguez-Martinez, Andrea, Posma, Joram M, Ayala, Rafael, Neves, Ana L, Anwar, Maryam, Petretto, Enrico, Emanueli, Costanza, Gauguier, Dominique, Nicholson, Jeremy K, Dumas, Marc-Emmanuel

Journal:

Year:

2017

Language:

english

File:

PDF, 167 KB

english, 2017

40

Exploring the Genetic Landscape of Metabolic Phenotypes with MetaboSignal

Rodriguez-Martinez, Andrea, Ayala, Rafael, Posma, Joram M., Dumas, Marc-Emmanuel

Journal:

Current Protocols in Bioinformatics

Year:

2018

Language:

english

File:

PDF, 454 KB

english, 2018

41

Implication of gut microbiota metabolites in cardiovascular and metabolic diseases

Brial, Francois, Le Lay, Aurélie, Dumas, Marc-Emmanuel, Gauguier, Dominique

Journal:

Cellular and Molecular Life Sciences

Year:

2018

Language:

english

File:

PDF, 1.11 MB

english, 2018

42

Métabonomique et cartographie génétique

Gauguier, Dominique, Dumas, Marc-Emmanuel

Journal:

médecine/sciences

Year:

2007

File:

PDF, 125 KB

2007

43

Diet-induced metabolic changes of the human gut microbiome: importance of short-chain fatty acids, methylamines and indoles

Abdul Rahim, Mohd Badrin Hanizam, Chilloux, Julien, Martinez-Gili, Laura, Neves, Ana L., Myridakis, Antonis, Gooderham, Nigel, Dumas, Marc-Emmanuel

Journal:

Acta Diabetologica

Year:

2019

Language:

english

File:

PDF, 750 KB

english, 2019

44

Dominant gut Prevotella copri in gastrectomised non-obese diabetic GotoâKakizaki rats improves glucose homeostasis through enhanced FXR signalling

PÃ©an, NoÃ©mie, Le Lay, Aurelie, Brial, Francois, Wasserscheid, Jessica, Rouch, Claude, Vincent, MylÃ¨ne, Myridakis, Antonis, Hedjazi, Lyamine, Dumas, Marc-Emmanuel, Grundberg, Elin, Lathrop, Mark, Ma

Journal:

Year:

2020

Language:

english

File:

PDF, 2.32 MB

english, 2020

45

The APOA1bpâSREBFâNOTCH axis is associated with reduced atherosclerosis risk in morbidly obese patients

Mayneris-Perxachs, Jordi, Puig, Josep, Burcelin, RÃ©my, Dumas, Marc-Emmanuel, Barton, Richard H., Hoyles, Lesley, Federici, Massimo, FernÃ¡ndez-Real, JosÃ©-Manuel

Journal:

Clinical Nutrition

Year:

2020

Language:

english

File:

PDF, 2.29 MB

english, 2020

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